Index

A

add() (pyshgp.gp.population.Population method) (pyshgp.gp.variation.VariationStrategy method) (pyshgp.utils.DiscreteProbDistrib method) AdditionMutation (class in pyshgp.gp.variation)

alignment_deviation (pyshgp.gp.variation.Alternation attribute) all_error_vectors() (pyshgp.gp.population.Population method) all_total_errors() (pyshgp.gp.population.Population method) Alternation (class in pyshgp.gp.variation) Atom (class in pyshgp.push.atoms)

B

best() (pyshgp.gp.population.Population method) best_n() (pyshgp.gp.population.Population method)

best_seen (pyshgp.gp.search.SearchAlgorithm attribute) BoolVector (class in pyshgp.push.types)

C

CaseStream (class in pyshgp.gp.selection) Char (class in pyshgp.push.types) char (pyshgp.push.types.Char attribute) CharVector (class in pyshgp.push.types) check_1d() (in module pyshgp.validation) check_2d() (in module pyshgp.validation) check_column_types() (in module pyshgp.validation) check_is_fitted() (in module pyshgp.validation) check_num_columns() (in module pyshgp.validation) check_X_y() (in module pyshgp.validation) checknum_parents() (pyshgp.gp.variation.VariationOperator method) choice() (in module pyshgp.gp.selection) (in module pyshgp.gp.variation) Cloning (class in pyshgp.gp.variation) CLOSE (pyshgp.gp.genome.GeneTypes attribute) close() (pyshgp.gp.search.ParallelContext method)

Closer (class in pyshgp.push.atoms) code_at_point() (pyshgp.push.atoms.CodeBlock method) code_block (pyshgp.push.instruction.Instruction attribute) code_blocks (pyshgp.push.atoms.InstructionMeta attribute), [1] (pyshgp.push.instruction.Instruction attribute) (pyshgp.push.instruction.ProducesManyOfTypeInstruction attribute) (pyshgp.push.instruction.SimpleInstruction attribute) (pyshgp.push.instruction.StateToStateInstruction attribute) (pyshgp.push.instruction.TakesStateInstruction attribute) CodeBlock (class in pyshgp.push.atoms) coerce() (pyshgp.push.types.PushType method) (pyshgp.push.types.PushVectorType method) config (pyshgp.gp.search.SearchAlgorithm attribute) copy() (pyshgp.utils.Copyable method) Copyable (class in pyshgp.utils) create_and_register() (pyshgp.push.type_library.PushTypeLibrary method) CsvTap (class in pyshgp.tap)

D

damerau_levenshtein_distance() (in module pyshgp.gp.evaluation) DatasetEvaluator (class in pyshgp.gp.evaluation) dec() (pyshgp.gp.genome.Opener method) default_error_function() (pyshgp.gp.evaluation.Evaluator method) DeletionMutation (class in pyshgp.gp.variation) depth() (pyshgp.push.atoms.CodeBlock method) dir() (pyshgp.tap.LogFileTap method) DiscreteProbDistrib (class in pyshgp.utils)

distribution (pyshgp.gp.genome.GeneSpawner attribute) do() (pyshgp.tap.Tap method) (pyshgp.tap.TapManager static method) docstring (pyshgp.push.instruction.Instruction attribute), [1] (pyshgp.push.instruction.ProducesManyOfTypeInstruction attribute) (pyshgp.push.instruction.SimpleInstruction attribute) (pyshgp.push.instruction.StateToStateInstruction attribute) (pyshgp.push.instruction.TakesStateInstruction attribute)

E

elements (pyshgp.gp.variation.VariationStrategy attribute) (pyshgp.utils.DiscreteProbDistrib attribute) Elite (class in pyshgp.gp.selection) empty_character() (pyshgp.validation.PushError class method) ERC (pyshgp.gp.genome.GeneTypes attribute) erc_generator (pyshgp.gp.genome.GeneSpawner attribute) error_diversity() (pyshgp.gp.population.Population method) error_vector (pyshgp.gp.individual.Individual attribute) error_vector() (pyshgp.gp.individual.Individual property) error_vector_bytes (pyshgp.gp.individual.Individual attribute) error_vector_bytes() (pyshgp.gp.individual.Individual property)

evaluate() (pyshgp.gp.evaluation.DatasetEvaluator method) (pyshgp.gp.evaluation.Evaluator method) (pyshgp.gp.evaluation.FunctionEvaluator method) (pyshgp.gp.population.Population method) (pyshgp.push.instruction.Instruction method) (pyshgp.push.instruction.ProducesManyOfTypeInstruction method) (pyshgp.push.instruction.SimpleInstruction method) (pyshgp.push.instruction.StateToStateInstruction method) (pyshgp.push.instruction.TakesStateInstruction method) evaluate_atom() (pyshgp.push.interpreter.PushInterpreter method) evaluated (pyshgp.gp.population.Population attribute) Evaluator (class in pyshgp.gp.evaluation)

F

f (pyshgp.push.instruction.ProducesManyOfTypeInstruction attribute) (pyshgp.push.instruction.SimpleInstruction attribute) (pyshgp.push.instruction.StateToStateInstruction attribute) (pyshgp.push.instruction.TakesStateInstruction attribute) failed_coerce() (pyshgp.validation.PushError class method)

fit() (pyshgp.gp.estimators.PushEstimator method) FitnessProportionate (class in pyshgp.gp.selection) FloatVector (class in pyshgp.push.types) flush() (pyshgp.push.stack.PushStack method) from_dict() (pyshgp.push.state.PushState class method) FunctionEvaluator (class in pyshgp.gp.evaluation)

G

generation (pyshgp.gp.search.SearchAlgorithm attribute) Genesis (class in pyshgp.gp.variation) GeneSpawner (class in pyshgp.gp.genome) GeneticAlgorithm (class in pyshgp.gp.search) GeneTypes (class in pyshgp.gp.genome) Genome (class in pyshgp.gp.genome) genome (pyshgp.gp.individual.Individual attribute), [1] genome_diversity() (pyshgp.gp.population.Population method)

genome_to_code() (in module pyshgp.gp.genome) GenomeSimplifier (class in pyshgp.gp.genome) get() (pyshgp.tap.TapManager static method) get_search_algo() (in module pyshgp.gp.search) get_selector() (in module pyshgp.gp.selection) (pyshgp.gp.search.SearchConfiguration method) get_variation_op() (pyshgp.gp.search.SearchConfiguration method) get_variation_operator() (in module pyshgp.gp.variation) growth_cap_exceeded (pyshgp.push.interpreter.PushInterpreterStatus attribute)

I

id (pyshgp.gp.individual.Individual attribute) Individual (class in pyshgp.gp.individual) infer_literal() (in module pyshgp.push.type_library) init_population() (pyshgp.gp.search.SearchAlgorithm method) Input (class in pyshgp.push.atoms) INPUT (pyshgp.gp.genome.GeneTypes attribute) input_index (pyshgp.push.atoms.Input attribute), [1] input_stacks (pyshgp.push.instruction.ProducesManyOfTypeInstruction attribute) (pyshgp.push.instruction.SimpleInstruction attribute) inputs (pyshgp.push.state.PushState attribute) insert() (pyshgp.push.stack.PushStack method) instantiate_using() (in module pyshgp.utils)

Instruction (class in pyshgp.push.instruction) INSTRUCTION (pyshgp.gp.genome.GeneTypes attribute) instruction_set (pyshgp.gp.genome.GeneSpawner attribute) (pyshgp.push.interpreter.PushInterpreter attribute) InstructionMeta (class in pyshgp.push.atoms) InstructionSet (class in pyshgp.push.instruction_set) IntVector (class in pyshgp.push.types) is_collection (pyshgp.push.types.PushType attribute) is_empty() (pyshgp.push.stack.PushStack method) is_instance() (pyshgp.push.types.PushType method) is_numeric (pyshgp.push.types.PushType attribute) is_solved() (pyshgp.gp.search.SearchAlgorithm method)

J

JsonLinesTap (class in pyshgp.tap)

L

Lexicase (class in pyshgp.gp.selection) list_rindex() (in module pyshgp.utils) Literal (class in pyshgp.push.atoms) LITERAL (pyshgp.gp.genome.GeneTypes attribute) LiteralMutation (class in pyshgp.gp.variation) literals (pyshgp.gp.genome.GeneSpawner attribute) load() (pyshgp.gp.estimators.PushEstimator method) (pyshgp.utils.Saveable static method)

load_code() (pyshgp.push.state.PushState method) load_inputs() (pyshgp.push.state.PushState method) log() (pyshgp.tap.CsvTap method) (pyshgp.tap.JsonLinesTap method) (pyshgp.tap.LogFileTap method) LogFileTap (class in pyshgp.tap) long_character() (pyshgp.validation.PushError class method)

M

make_vector_type() (in module pyshgp.push.types) mean_genome_length() (pyshgp.gp.population.Population method) median_absolute_deviation() (in module pyshgp.gp.selection) median_error() (pyshgp.gp.population.Population method) meta() (pyshgp.push.instruction.Instruction method) module pyshgp.gp pyshgp.gp.estimators pyshgp.gp.evaluation pyshgp.gp.genome pyshgp.gp.individual pyshgp.gp.population pyshgp.gp.search pyshgp.gp.selection pyshgp.gp.variation pyshgp.push pyshgp.push.atoms pyshgp.push.instruction pyshgp.push.instruction_set pyshgp.push.interpreter pyshgp.push.stack pyshgp.push.state pyshgp.push.type_library pyshgp.push.types pyshgp.tap pyshgp.utils pyshgp.validation

N

n_input (pyshgp.gp.genome.GeneSpawner attribute) name (pyshgp.push.atoms.InstructionMeta attribute), [1] (pyshgp.push.instruction.Instruction attribute), [1] (pyshgp.push.instruction.ProducesManyOfTypeInstruction attribute) (pyshgp.push.instruction.SimpleInstruction attribute) (pyshgp.push.instruction.StateToStateInstruction attribute) (pyshgp.push.instruction.TakesStateInstruction attribute) (pyshgp.push.types.PushType attribute) no_stack_item (pyshgp.utils.Token attribute) no_type() (pyshgp.validation.PushError class method)

normal (pyshgp.push.interpreter.PushInterpreterStatus attribute) nth() (pyshgp.push.stack.PushStack method) num_parents (pyshgp.gp.variation.AdditionMutation attribute) (pyshgp.gp.variation.Alternation attribute) (pyshgp.gp.variation.Cloning attribute) (pyshgp.gp.variation.DeletionMutation attribute) (pyshgp.gp.variation.Genesis attribute) (pyshgp.gp.variation.LiteralMutation attribute) (pyshgp.gp.variation.VariationOperator attribute) (pyshgp.gp.variation.VariationPipeline attribute)

O

observe_stacks() (pyshgp.push.state.PushState method) one_individual_per_error_vector() (in module pyshgp.gp.selection) Opener (class in pyshgp.gp.genome) operators (pyshgp.gp.variation.VariationPipeline attribute)

other_stacks (pyshgp.push.instruction.TakesStateInstruction attribute) output_stack (pyshgp.push.instruction.ProducesManyOfTypeInstruction attribute) output_stacks (pyshgp.push.instruction.SimpleInstruction attribute) (pyshgp.push.instruction.TakesStateInstruction attribute)

P

p_evaluate() (pyshgp.gp.population.Population method) ParallelContext (class in pyshgp.gp.search) path() (pyshgp.tap.LogFileTap method) pop() (pyshgp.push.stack.PushStack method) pop_from_stacks() (pyshgp.push.state.PushState method) Population (class in pyshgp.gp.population) population (pyshgp.gp.search.SearchAlgorithm attribute) post() (pyshgp.tap.StdOutRun method) (pyshgp.tap.StdOutSimplification method) (pyshgp.tap.StdOutSimplificationStep method) (pyshgp.tap.Tap method) pre() (pyshgp.tap.StdOutRun method) (pyshgp.tap.StdOutSearchStepTap method) (pyshgp.tap.StdOutSimplification method) (pyshgp.tap.Tap method) predict() (pyshgp.gp.estimators.PushEstimator method) pretty_print() (pyshgp.push.state.PushState method) pretty_str() (pyshgp.push.atoms.Atom method) (pyshgp.push.atoms.Closer method) (pyshgp.push.atoms.CodeBlock method) (pyshgp.push.atoms.Input method) (pyshgp.push.atoms.InstructionMeta method) (pyshgp.push.atoms.Literal method) produce() (pyshgp.gp.variation.AdditionMutation method) (pyshgp.gp.variation.Alternation method) (pyshgp.gp.variation.Cloning method) (pyshgp.gp.variation.DeletionMutation method) (pyshgp.gp.variation.Genesis method) (pyshgp.gp.variation.LiteralMutation method) (pyshgp.gp.variation.VariationOperator method) (pyshgp.gp.variation.VariationPipeline method) ProducesManyOfTypeInstruction (class in pyshgp.push.instruction) program() (pyshgp.gp.individual.Individual property) program_diversity() (pyshgp.gp.population.Population method) push() (pyshgp.push.stack.PushStack method) push_config (pyshgp.push.stack.PushStack attribute), [1] (pyshgp.push.state.PushState attribute) push_to_stacks() (pyshgp.push.state.PushState method) push_type (pyshgp.gp.variation.LiteralMutation attribute) (pyshgp.push.atoms.Literal attribute), [1] (pyshgp.push.stack.PushStack attribute), [1] push_type_for_type() (pyshgp.push.type_library.PushTypeLibrary method) push_type_of() (pyshgp.push.type_library.PushTypeLibrary method) PushBoolType (class in pyshgp.push.types) PushCharType (class in pyshgp.push.types) PushError PushEstimator (class in pyshgp.gp.estimators) PushFloatType (class in pyshgp.push.types) PushInterpreter (class in pyshgp.push.interpreter)

PushInterpreterStatus (class in pyshgp.push.interpreter) PushIntType (class in pyshgp.push.types) PushStack (class in pyshgp.push.stack) PushState (class in pyshgp.push.state) PushStrType (class in pyshgp.push.types) PushType (class in pyshgp.push.types) PushTypeLibrary (class in pyshgp.push.type_library) PushVectorType (class in pyshgp.push.types) pyshgp.gp module pyshgp.gp.estimators module pyshgp.gp.evaluation module pyshgp.gp.genome module pyshgp.gp.individual module pyshgp.gp.population module pyshgp.gp.search module pyshgp.gp.selection module pyshgp.gp.variation module pyshgp.push module pyshgp.push.atoms module pyshgp.push.instruction module pyshgp.push.instruction_set module pyshgp.push.interpreter module pyshgp.push.stack module pyshgp.push.state module pyshgp.push.type_library module pyshgp.push.types module pyshgp.tap module pyshgp.utils module pyshgp.validation module

R

random() (in module pyshgp.gp.selection) (in module pyshgp.gp.variation) random_erc() (pyshgp.gp.genome.GeneSpawner method) random_gene() (pyshgp.gp.genome.GeneSpawner method) random_input() (pyshgp.gp.genome.GeneSpawner method) random_instruction() (pyshgp.gp.genome.GeneSpawner method) random_literal() (pyshgp.gp.genome.GeneSpawner method) rate (pyshgp.gp.variation.AdditionMutation attribute) (pyshgp.gp.variation.Alternation attribute) (pyshgp.gp.variation.DeletionMutation attribute) (pyshgp.gp.variation.LiteralMutation attribute) register() (pyshgp.push.instruction_set.InstructionSet method) (pyshgp.push.type_library.PushTypeLibrary method) (pyshgp.tap.TapManager static method) register_core (pyshgp.push.instruction_set.InstructionSet attribute) (pyshgp.push.type_library.PushTypeLibrary attribute)

register_core() (pyshgp.push.instruction_set.InstructionSet method) (pyshgp.push.type_library.PushTypeLibrary method) register_core_by_name() (pyshgp.push.instruction_set.InstructionSet method) register_core_by_stack() (pyshgp.push.instruction_set.InstructionSet method) register_list() (pyshgp.push.instruction_set.InstructionSet method) (pyshgp.push.type_library.PushTypeLibrary method) required_stacks() (pyshgp.push.instruction.Instruction method) (pyshgp.push.instruction.ProducesManyOfTypeInstruction method) (pyshgp.push.instruction.SimpleInstruction method) (pyshgp.push.instruction.StateToStateInstruction method) (pyshgp.push.instruction.TakesStateInstruction method) (pyshgp.push.instruction_set.InstructionSet method) revert (pyshgp.utils.Token attribute) run() (pyshgp.gp.search.SearchAlgorithm method) (pyshgp.push.interpreter.PushInterpreter method) runtime_limit_exceeded (pyshgp.push.interpreter.PushInterpreterStatus attribute)

S

sample() (pyshgp.utils.DiscreteProbDistrib method) sample_n() (pyshgp.utils.DiscreteProbDistrib method) save() (pyshgp.gp.estimators.PushEstimator method) (pyshgp.utils.Saveable method) Saveable (class in pyshgp.utils) score() (pyshgp.gp.estimators.PushEstimator method) SearchAlgorithm (class in pyshgp.gp.search) SearchConfiguration (class in pyshgp.gp.search) select() (pyshgp.gp.selection.Elite method) (pyshgp.gp.selection.FitnessProportionate method) (pyshgp.gp.selection.Lexicase method) (pyshgp.gp.selection.Selector method) (pyshgp.gp.selection.SimpleMultiSelectorMixin method) select_one() (pyshgp.gp.selection.Elite method) (pyshgp.gp.selection.FitnessProportionate method) (pyshgp.gp.selection.Lexicase method) (pyshgp.gp.selection.Selector method) (pyshgp.gp.selection.Tournament method) Selector (class in pyshgp.gp.selection) set_nth() (pyshgp.push.stack.PushStack method) set_type_library() (pyshgp.push.instruction_set.InstructionSet method) set_verbosity() (in module pyshgp.tap) shuffle() (in module pyshgp.gp.selection) signature (pyshgp.gp.individual.Individual attribute)

SimpleInstruction (class in pyshgp.push.instruction) SimpleMultiSelectorMixin (class in pyshgp.gp.selection) simplify() (pyshgp.gp.genome.GenomeSimplifier method) SimulatedAnnealing (class in pyshgp.gp.search) size (pyshgp.gp.variation.Genesis attribute) size() (pyshgp.push.atoms.CodeBlock method) (pyshgp.push.state.PushState method) (pyshgp.utils.DiscreteProbDistrib method) spawn_genome() (pyshgp.gp.genome.GeneSpawner method) stacks_used (pyshgp.push.instruction.StateToStateInstruction attribute) state (pyshgp.push.interpreter.PushInterpreter attribute) StateToStateInstruction (class in pyshgp.push.instruction) status (pyshgp.push.interpreter.PushInterpreter attribute) stdout (pyshgp.push.state.PushState attribute) StdOutRun (class in pyshgp.tap) StdOutSearchStepTap (class in pyshgp.tap) StdOutSimplification (class in pyshgp.tap) StdOutSimplificationStep (class in pyshgp.tap) step() (pyshgp.gp.search.GeneticAlgorithm method) (pyshgp.gp.search.SearchAlgorithm method) (pyshgp.gp.search.SimulatedAnnealing method) step_limit_exceeded (pyshgp.push.interpreter.PushInterpreterStatus attribute) strip_docstrings (pyshgp.push.instruction_set.InstructionSet attribute) StrVector (class in pyshgp.push.types) supported_stacks() (pyshgp.push.type_library.PushTypeLibrary method)

T

take() (pyshgp.push.stack.PushStack method) TakesStateInstruction (class in pyshgp.push.instruction) Tap (class in pyshgp.tap) tap() (in module pyshgp.tap) TapManager (class in pyshgp.tap) tear_down() (pyshgp.gp.search.SearchConfiguration method) Token (class in pyshgp.utils)

top() (pyshgp.push.stack.PushStack method) total_error (pyshgp.gp.individual.Individual attribute) total_error() (pyshgp.gp.individual.Individual property) Tournament (class in pyshgp.gp.selection) tournament_size (pyshgp.gp.selection.Tournament attribute) type_library (pyshgp.push.instruction_set.InstructionSet attribute) (pyshgp.push.state.PushState attribute)

U

unevaluated (pyshgp.gp.population.Population attribute) unregister() (pyshgp.push.instruction_set.InstructionSet method) (pyshgp.push.type_library.PushTypeLibrary method) (pyshgp.tap.TapManager static method)

untyped (pyshgp.push.state.PushState attribute) untyped_to_typed() (pyshgp.push.interpreter.PushInterpreter method)

V

value (pyshgp.push.atoms.Literal attribute), [1] VariationOperator (class in pyshgp.gp.variation)

VariationPipeline (class in pyshgp.gp.variation) VariationStrategy (class in pyshgp.gp.variation)

W

whole_state (pyshgp.utils.Token attribute)

with_code_inserted_at_point() (pyshgp.push.atoms.CodeBlock method)